HPhi

HPhi is available on the following servers.

• Large-Scale Parallel Computing Server

Create a script file in advance.

#!/bin/sh
#PBS -l select=nodes
#PBS -q queue
#PBS -N jobname

DIRNAME=`basename $PBS_O_WORKDIR`
WORKDIR=/work/$USER/$PBS_JOBID
mkdir -p $WORKDIR
cp -raf  $PBS_O_WORKDIR $WORKDIR
cd $WORKDIR/$DIRNAME 

export OMP_NUM_THREADS= parallel number
aprun [ -n nodes ][ -d parallel number ] -j 1 --cc depth /work/app/HPhi/current/build/src/HPhi -s input file > output file 2> error file

cd; if cp -raf $WORKDIR/$DIRNAME $PBS_O_WORKDIR/.. ; then rm -rf $WORKDIR; fi

(Example)

#!/bin/sh
#PBS -l select=1
#PBS -q P_016
#PBS -N hphi

DIRNAME=`basename $PBS_O_WORKDIR`
WORKDIR=/work/$USER/$PBS_JOBID
mkdir -p $WORKDIR
cp -raf  $PBS_O_WORKDIR $WORKDIR
cd $WORKDIR/$DIRNAME 

export OMP_NUM_THREADS=36
aprun -n 1 -d 36 -j 1 --cc depth /work/app/HPhi/current/build/src/HPhi -s  stan.in > hphi.out 2> hphi.err

cd; if cp -raf $WORKDIR/$DIRNAME $PBS_O_WORKDIR/.. ; then rm -rf $WORKDIR; fi