SALMON
===================================
 
Following version is available.

.. csv-table:: 
   :header: "version", "module","execution queue"
   :widths: 20, 79, 1

   "2.2.2", "/work/app/SALMON/SALMON_v2.2.2/bin/salmon", "P_030 TP_002 MP_001 CP_001 DP_002 S_001 CS_001"


.. attention::
  Execute following command in advance.

  module load oneapi/2025.3.1


- Job Submission Script

.. code-block :: none

   #!/bin/sh 
   #PBS -l select=nodes 
   #PBS -q queue
   #PBS -N jobname

   module -s load oneapi/2025.3.1

   cd ${PBS_O_WORKDIR}

   mpirun [ -np total tasks ][ -ppn MPI tasks per node ] -hostfile $PBS_NODEFILE /work/app/SALMON/SALMON_v2.2.2/bin/salmon < input file > output file 2> error file

- Example

Hybrid parallelization

.. code-block :: none

   #!/bin/sh 
   #PBS -l select=1 
   #PBS -q P_030
   #PBS -N salmon

   module -s load oneapi/2025.3.1
   export OMP_NUM_THREADS=2

   cd ${PBS_O_WORKDIR}

   mpirun -np 56 -ppn 56 -hostfile $PBS_NODEFILE /work/app/SALMON/SALMON_v2.2.2/bin/salmon < input.inp > salmon.out 2> salmon.err

MPI parallelization

.. code-block :: none

   #!/bin/sh 
   #PBS -l select=1 
   #PBS -q P_030
   #PBS -N salmon

   module -s load oneapi/2025.3.1

   cd ${PBS_O_WORKDIR}

   mpirun -np 112 -ppn 112 -hostfile $PBS_NODEFILE /work/app/SALMON/SALMON_v2.2.2/bin/salmon < input.inp > salmon.out 2> salmon.err